dandidav / dandisets / 000026 / draft / derivatives / PSOCT_postprocessing_code / PSOCT_code
Name Type Size Created Modified
../
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AIP_stitch.m [metadata]
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AIP_stitch_Ann.m [metadata]
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AIP_stitch_Hui.m [metadata]
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BKG_stitch.m [metadata]
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BaSiC_shading_and_co_cross_stitch.m [metadata]
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BaSiC_shading_and_ori_stitch.m [metadata]
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BaSiC_shading_and_ref_stitch.m [metadata]
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BaSiC_shading_and_ref_stitch_Ann.m [metadata]
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BaSiC_shading_and_ref_stitch_PTSD.m [metadata]
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BaSiC_shading_and_ret_stitch.m [metadata]
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Bfg_stitch.m [metadata]
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Bfg_stitch_6692.m [metadata]
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Bfg_stitch_7688.m [metadata]
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Bfg_stitch_7694.m [metadata]
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Bfg_stitch_8921.m [metadata]
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Bfg_stitch_NC.m [metadata]
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Bfg_stitch_PTSD1.m [metadata]
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Concat_2P.m [metadata]
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Concat_ref_high_res_vol.m [metadata]
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Concat_ref_vol.m [metadata]
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Concat_ref_vol.m~ [metadata]
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Concat_ref_vol_4x4x2.m [metadata]
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Concat_ret_vol.m [metadata]
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Cycle_ori.m [metadata]
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Double_check_tile_recon.m [metadata]
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Double_check_tile_recon.sh [metadata]
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FOV_curvature_correction.m [metadata]
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Find_FOV_Curvature.m [metadata]
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Find_Grid_Distortion.m [metadata]
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Fitting_6692.m [metadata]
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Fitting_6692.sh [metadata]
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Fitting_6692_tmp.m [metadata]
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Fitting_6692_tmp.sh [metadata]
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Fitting_7688.m [metadata]
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Fitting_7688.sh [metadata]
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Fitting_7694.m [metadata]
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Fitting_7694.sh [metadata]
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Fitting_8921.m [metadata]
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Fitting_8921.sh [metadata]
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Fitting_Hui_0415.m [metadata]
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Fitting_Hui_0505.m [metadata]
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Fitting_Hui_0505.sh [metadata]
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Fitting_Hui_0530.m [metadata]
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Fitting_Hui_SupFrontal.m [metadata]
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Fitting_Hui_SupFrontal.sh [metadata]
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Fitting_NC.m [metadata]
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Fitting_NC.sh [metadata]
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Fitting_PTSD1_1.m [metadata]
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Fitting_PTSD1_1.sh [metadata]
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Fitting_PTSD1_2.m [metadata]
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Fitting_PTSD1_2.sh [metadata]
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Fitting_PTSD1_3.m [metadata]
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Fitting_PTSD1_3.sh [metadata]
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Fitting_after_recon.sh [metadata]
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Fitting_after_recon_JY.m [metadata]
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GenBFGbg.m [metadata]
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Gen_2P_coord.m [metadata]
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Gen_OCT_coord.m [metadata]
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Gen_ori_2D.m [metadata]
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Gen_ori_RGB.m [metadata]
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Gen_slice_height.m [metadata]
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Gen_stitch_macro.m [metadata]
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Generate_grid_matrix.m [metadata]
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Generate_undistorted_grid_pattern.m [metadata]
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Grid_correction.m [metadata]
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Grid_correction_evaluation.m [metadata]
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Hui_sum_all.m [metadata]
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Hui_sum_all_small_FOV.m [metadata]
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KeepMajorMask.m [metadata]
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MIP_stitch.m [metadata]
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MIP_stitch_6692.m [metadata]
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MIP_stitch_7688.m [metadata]
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MIP_stitch_7694.m [metadata]
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MIP_stitch_8921.m [metadata]
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MIP_stitch_Ann.m [metadata]
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MIP_stitch_NC.m [metadata]
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MIP_stitch_PTSD1.m [metadata]
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Mub_stitch.m [metadata]
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Mub_stitch_6692.m [metadata]
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Mub_stitch_7688.m [metadata]
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Mub_stitch_7694.m [metadata]
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Mub_stitch_8921.m [metadata]
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Mub_stitch_Hui.m [metadata]
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Mub_stitch_NC.m [metadata]
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Mub_stitch_PTSD1.m [metadata]
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Mus_stitch.m [metadata]
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Mus_stitch_6692.m [metadata]
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Mus_stitch_7688.m [metadata]
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Mus_stitch_7694.m [metadata]
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Mus_stitch_8921.m [metadata]
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Mus_stitch_Hui.m [metadata]
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Mus_stitch_NC.m [metadata]
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Mus_stitch_PTSD1.m [metadata]
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Mus_stitch_True.m [metadata]
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Mus_stitch_tmp.m [metadata]
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My_downsample.m [metadata]
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OCT_ret_vol_stitch_from_AB.m [metadata]
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OCT_ret_vol_stitch_from_AB.sh [metadata]
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Optical_fitting.m [metadata]
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Optical_fitting_6692.m [metadata]
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Optical_fitting_6692_fix_rayleigh.m [metadata]
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Optical_fitting_6692_tmp.m [metadata]
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Optical_fitting_7688.m [metadata]
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Optical_fitting_7694.m [metadata]
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Optical_fitting_8921.m [metadata]
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Optical_fitting_Hui_0415.m [metadata]
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Optical_fitting_Hui_0505.m [metadata]
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Optical_fitting_Hui_0530.m [metadata]
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Optical_fitting_Hui_SupFrontal.m [metadata]
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Optical_fitting_MGH.m [metadata]
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Optical_fitting_NC.m [metadata]
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Optical_fitting_PTSD1.m [metadata]
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Optical_fitting_TDE.m [metadata]
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Optical_fitting_Zfsmooth.m [metadata]
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Optical_fitting_finalized.m [metadata]
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Optical_fitting_immune2surf.m [metadata]
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Optical_fitting_intralipids.m [metadata]
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Ori_processing_after_recon.m [metadata]
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Ori_processing_after_recon.sh [metadata]
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Ori_stitch.m [metadata]
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Ori_stitch_Ann.m [metadata]
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R2_stitch.m [metadata]
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R2_stitch_7694.m [metadata]
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R2_stitch_8921.m [metadata]
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R2_stitch_NC.m [metadata]
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Read_nii.m [metadata]
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Read_write_registered.m [metadata]
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Recal_ori_after_recon.m [metadata]
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Ref_ROI_recon.m [metadata]
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Ref_ROI_stitch.sh [metadata]
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Ret_aft_recon.sh [metadata]
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Ret_processing_after_recon.m [metadata]
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Ret_stitch.m [metadata]
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Ret_stitch_Ann.m [metadata]
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Ret_stitch_real.m [metadata]
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SaveTiff.m [metadata]
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Save_small_Tiff.m [metadata]
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ShadingAllSlice.m [metadata]
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Stitch_2P.m [metadata]
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Sum_all_2P.m [metadata]
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Surf_stitch.m [metadata]
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Test_grid_correction.m [metadata]
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Transfer2uint16.m [metadata]
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ZF_stitch.m [metadata]
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ZR_stitch.m [metadata]
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Z_stage_test.m [metadata]
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cat_ref_high_res.sh [metadata]
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cmap.mat [metadata]
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cmap_v3.mat [metadata]
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co_cross_stitch.m [metadata]
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co_cross_stitch.sh [metadata]
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co_cross_stitch_wrap.m [metadata]
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co_stitch.m [metadata]
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cross_stitch.m [metadata]
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delete_file.m [metadata]
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depth_normalize_2.m [metadata]
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generating_macro_scripts.m [metadata]
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intralipid_fitting.m [metadata]
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license.txt [metadata]
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lipofuscin_segmentation.m [metadata]
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lipofuscin_segmentation.m~ [metadata]
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lipofusionsegmentation_ayman.m [metadata]
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lipofusionsegmentation_ayman_test.m [metadata]
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loadtiff.m [metadata]
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masking_fitting.m [metadata]
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move_data.m [metadata]
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move_data.sh [metadata]
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mus_analysis.m [metadata]
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mus_model.m [metadata]
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my_convn.m [metadata]
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my_smooth_1D.m [metadata]
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past_data_restitch.m [metadata]
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past_data_restitch.sh [metadata]
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plot_qBRM_fast.m [metadata]
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ref_vol_stitch.m [metadata]
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ref_vol_stitch.sh [metadata]
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ref_vol_stitch_after_BASIC.m [metadata]
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ref_vol_stitch_from_AB.m [metadata]
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ref_vol_stitch_high_res.m [metadata]
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ref_vol_stitch_non_ds.m [metadata]
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ref_zoomin_stitch.m [metadata]
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ref_zoomin_stitch.sh [metadata]
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rename_2P_tiles.m [metadata]
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rename_file.m [metadata]
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ret_depth_resolve.m [metadata]
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ret_depth_resolve.sh [metadata]
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ret_diff_vol_stitch.m [metadata]
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ret_vol_stitch.m [metadata]
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ret_vol_stitch.sh [metadata]
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ret_vol_stitch_from_AB.m [metadata]
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ret_vol_stitch_from_AB_no_ds.m [metadata]
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ret_vol_stitch_from_AB_window_smoothing.m [metadata]
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rewrite_aip_tiles.m [metadata]
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rewrite_bfg_tiles.m [metadata]
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rewrite_mub_tiles.m [metadata]
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rewrite_mus_tiles.m [metadata]
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saveastiff.m [metadata]
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saveastiff_demo.m [metadata]
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smooth_matrix.m [metadata]
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test_fitting_speed.m [metadata]
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